Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQTIYGANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQYAQEVAGGVFPADEHSF
1OY0 Chain:A ((18-279))
-----------------RTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPG--------------DAAEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQYAQEVAGGVFPADEH--
General information:
TITO was launched using:
RESULT:
Template:
1OY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204341 for 2077 contacts (-98.4/contact) +
2D Compatibility (PS) -26922 + (NN) -10247 + (LL) 244
1D Compatibility (HY) -32000 + (ID) 12350
Total energy: -285616.0 ( -137.51 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1OY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OY0-query.scw
PDB file :
Tito_Scwrl_1OY0.pdb
: