Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPAPSPDARAVVTGASQNIGAALATELAARGHHLIVTARREDVLTELAARLADKYRVTVDVRPADLADPQERSKLADELAAR--PISILCANAGTATFGPIASLDLAGEK--TQVQLNAVAVHDLTLAVLP--GMIERKAGGILISGSAAGNSPIPYNATYAATKAFVNTFSESLRGELRGSGVHVTVLAPGPVRTELPDASEASLVEKLVPDFLWISTEH-----TARVSLNALERNKMRVVPGLTSKAMSVASQYAPRAIVAPIVGAFYKRLGGS
2RHR Chain:A ((25-237))
-----------ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR--LGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-----AASVREHYSDIWEVSTEEAFDRITARV-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RHR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123597 for 1593 contacts (-77.6/contact) +
2D Compatibility (PS) -21891 + (NN) -10090 + (LL) 3700
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -167478.0 ( -105.13 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2RHR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RHR-query.scw
PDB file :
Tito_Scwrl_2RHR.pdb
: