Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVEAGGAAADELSG-----LFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVP-LGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
4URE Chain:B ((3-244))
-------LEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTD-AQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIG-IEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNV----PLETRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGG---------
General information:
TITO was launched using:
RESULT:
Template:
4URE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135047 for 2077 contacts (-65.0/contact) +
2D Compatibility (PS) -25834 + (NN) -12645 + (LL) 1780
1D Compatibility (HY) -17200 + (ID) 4550
Total energy: -193496.0 ( -93.16 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_4URE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4URE-query.scw
PDB file :
Tito_Scwrl_4URE.pdb
: