Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGG-QVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGN-FFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKE-GIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMA-KAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
2JJX Chain:A ((10-246))
---------------------------RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLA-EEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLIND
General information:
TITO was launched using:
RESULT:
Template:
2JJX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -192965 for 1890 contacts (-102.1/contact) +
2D Compatibility (PS) -25861 + (NN) -12626 + (LL) 1336
1D Compatibility (HY) -20800 + (ID) 4400
Total energy: -255316.0 ( -135.09 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_2JJX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JJX-query.scw
PDB file :
Tito_Scwrl_2JJX.pdb
: