Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAP---VSVSATTTDGLGLTGRGEGLAAIATALVVSLR
3F0F Chain:B ((25-178))
-----RIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV---
General information:
TITO was launched using:
RESULT:
Template:
3F0F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133005 for 1275 contacts (-104.3/contact) +
2D Compatibility (PS) -16695 + (NN) -13234 + (LL) 532
1D Compatibility (HY) -8000 + (ID) 3150
Total energy: -173552.0 ( -136.12 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3F0F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F0F-query.scw
PDB file :
Tito_Scwrl_3F0F.pdb
: