Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSPAPVQ------------VMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVA-AGVDPARLVLDPGLGFAK-TAQHNWAILHALPELV-----ATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAERIERDG |
| 2Y5J Chain:A ((8-292)) | --PAPLQCGRFELTFERPLVMGILN-------------ARDDALRRAERMIAEGADLLDIG--------PPVPLDEELARVIPLVEALRPLNVPLSIDTYKPAVMRAALAAGADLINDIWGFR-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVR-DFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVIGG-----KPPLERVAASVAAALCAVERGAAIVRVHDVAATVDALSVWNAVRAAAR----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y5J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -158556 for 1980 contacts (-80.1/contact) +
2D Compatibility (PS) -27342 + (NN) -22267 + (LL) 520
1D Compatibility (HY) -17600 + (ID) 5050
Total energy: -230295.0 ( -116.31 by residue)
QMean score : 0.504
|
|
|