Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS--EDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVR-NQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAG-----ANLFELENFVAREVDVAPAASGAPHAAGGRL
2V2P Chain:A ((5-171))
---RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTL--------------------
General information:
TITO was launched using:
RESULT:
Template:
2V2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58114 for 1209 contacts (-48.1/contact) +
2D Compatibility (PS) -17948 + (NN) -16107 + (LL) 1236
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -98283.0 ( -81.29 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2V2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V2P-query.scw
PDB file :
Tito_Scwrl_2V2P.pdb
: