Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPFAIAPSILSADFARLGEDVDKVLAAGADIVHFDVMDNHYVPNLTIGPMVCSALRKYGVSAPIDVHLMVSPVDRIIGDFIEAGATYITFHPEASQ--HIDRSLQLIRDGGCKAGLVFNPATPLEVLKYVMDKVDMVLLMSVNPGFGGQKFIPGTLDKLREARALIDASGREIRLEIDGGVNVKNIREIAAAGADTFVAGSAIFNAPDYAEVIRAMHAELAQAHQ
1TQJ Chain:A ((3-223))
-KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPL-TKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP---
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -203119 for 1838 contacts (-110.5/contact) +
2D Compatibility (PS) -23169 + (NN) -7919 + (LL) -40
1D Compatibility (HY) -22400 + (ID) 5050
Total energy: -261697.0 ( -142.38 by residue)
QMean score : 0.713
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: