Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTA-KKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
3Q62 Chain:A ((5-172))
VDKRESYTKEDLEASGRGELFGAGGPPLPAGNMLMMDRIVKMIEDGGSHNKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPDAKK-VTYRINFKRVIM--LIMGVADGEVLVDGKVIYTATDLKVGLFKDT---
General information:
TITO was launched using:
RESULT:
Template:
3Q62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135534 for 1314 contacts (-103.1/contact) +
2D Compatibility (PS) -17076 + (NN) -5547 + (LL) 164
1D Compatibility (HY) -20400 + (ID) 5450
Total energy: -183843.0 ( -139.91 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3Q62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q62-query.scw
PDB file :
Tito_Scwrl_3Q62.pdb
: