Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRIFADNAQSIGNTPLVQINRIAPR---GVTILAKIEGRNPGYSVKCRIGANMIWDAEASGRLKSGMTLVEPTSGNTGIGLAFVAAARGYKLILTMPASMSLERRKVLKALGAELVLT-------EPAKGMKGAIQKAEELVAGDPGKYFMPQQFDNPANPAIHEKTTGPEIWNDTEGAVDVLVSGVGTGGTLTGVSRYIKNTRGKPILAVAVEPVTSPVISQTLAGEEVKPAPHKIQGIGAGFVPKNLDLSLVDRVEKIGDDEAKNMALRLMQEEGILCGISSGAAMAAAVRLAEEPNMQGKTIVVILPDSGERYLSSMLFD------GLFSEQELTQ |
4COO Chain:A ((97-429)) | --KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEI----PNSHIL-DQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKE-KCPGCRIIGVDPEGS-ILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4COO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -102044 for 2900 contacts (-35.2/contact) +
2D Compatibility (PS) -34505 + (NN) -15306 + (LL) 248
1D Compatibility (HY) -24400 + (ID) 6750
Total energy: -182757.0 ( -63.02 by residue)
QMean score : 0.498
|
|
|