Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3MBM Chain:B ((24-178))
FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLG-SDADVLLHAITDALFGAAALGDIGRHFSDTD---KGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV--
General information:
TITO was launched using:
RESULT:
Template:
3MBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122880 for 1252 contacts (-98.1/contact) +
2D Compatibility (PS) -16722 + (NN) -11258 + (LL) 380
1D Compatibility (HY) -15200 + (ID) 4600
Total energy: -170280.0 ( -136.01 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3MBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MBM-query.scw
PDB file :
Tito_Scwrl_3MBM.pdb
: