Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRPQRISVLGATGSIGLSTLDVVQRHPDRYEAFALTGFSRLAELEALCLRHRPVYAVVPEQAAAIALQGSLAAAGIRTRVLFGEQALCEVASAPEVDMVMAAIVGAAGLPSTLAAVEAGKRVLLANKEALVMSGALFMQAVKRSGAVLLPIDSEHNAIFQSLPRNYADGLERVGVRRILLTASGGPFRETPLEQLASVTPEQACAHPNWSMGRKISVDSASMMNKGLELIEACWLFDAQPSQVEVVIHPQSVIHSMVDYVDGSVIAQLGNPDMRTPISYAMAWPERIDSGVSPLDMFAVGRLDFQRPDEQRFPCLRLASQAAETGGSAPAMLNAANEVAVAAFLERHIRFSDIAVIIEDVLNREAVTAVE--SLDQVLAADRRARSVAGQWLTRHAG |
2Y1F Chain:A ((23-388)) | -----RVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG--AHLDTL-LRQRAQTGVT-----NIAVADEHAAQRVGDIPYHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAA-RPGQIV-PVDSEHSALAQCLRGGTPDE-----VAKLVLTASGGPFRGWSAADLEHVTPEQAG------MGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWAR------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248597 for 3201 contacts (-77.7/contact) +
2D Compatibility (PS) -37996 + (NN) -16004 + (LL) 2456
1D Compatibility (HY) -26000 + (ID) 8150
Total energy: -334291.0 ( -104.43 by residue)
QMean score : 0.428
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