Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSLLFALLATLLLVGGARAETDPDYSMVLLTE-NFPPYNMAINGKNFAQEDNIDGIAVDIVREMFKRAGIKYSLTLRFPWDRIYKLALEKPGYGVF-VTARLAEREDKFKWVGPIGPDDWVLLAKGDSPITLGSLDEAKKYRIGAYKGDAIAEFLGKNGF--EADLAL-RDQENAQKLVKGQIDLWASGDPAGRYLAKQEGVTGLKTVL---RFNSDQLYLALNRETPDEVVQKLQAALDGMRKEGFVEDILNSYL
2PVU Chain:A ((38-261))
----------------------GATKKKVVVGTDAAFAPFEYMQ-------KGKIVGFDVDLLDAVMKAAGLDYELKN-IGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP--VKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN--SELKAKVDEALKNVINSGKYTEIYKKWF
General information:
TITO was launched using:
RESULT:
Template:
2PVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105231 for 1751 contacts (-60.1/contact) +
2D Compatibility (PS) -23588 + (NN) -13464 + (LL) 2840
1D Compatibility (HY) -9200 + (ID) 2100
Total energy: -150743.0 ( -86.09 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_2PVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PVU-query.scw
PDB file :
Tito_Scwrl_2PVU.pdb
: