Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYRPARVTSTSRFLNPYVVCFIVVAGVVILAVTIALLVYFLAFDQKSYFYRSSFQLLNVEYNSQLNSPATQEYRTLSGRIESLITKTFKESNLRNQFIRAHVAKLRQDGSGVRADVVMKFQFTRNNNGASMKSRIESVLRQMLNNSGNLEINPSTEITSLTDQAAANWLINECGAGPDLITLSEQRILGGTEAEEGSWPWQVSLRLNNAHHCGGSLINNMWILTAAHC-FRSNSNPRDWIATSGI----STTFPKLRMR-VRNILIHNNYKSATHENDIALVRLENSVTFTKDIHSVCLPAATQNIPPGSTAYVTGWGAQEYAGHTVPELRQGQVRIISNDVCNAPH-SYNGAILSGMLCAGVPQGGVDACQGDSGGPLVQEDSRRLWFIVGIVSWGDQCGLPDKPGVYTRVTAYLDWIRQQTGI |
| 1EKB Chain:B ((1-231)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYN--ITENMVCAGYEAGGVDSCQGDSGGPLMCQENNR-WLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQ----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EKB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162796 for 1981 contacts (-82.2/contact) +
2D Compatibility (PS) -24124 + (NN) -8822 + (LL) 14448
1D Compatibility (HY) -21600 + (ID) 4750
Total energy: -207644.0 ( -104.82 by residue)
QMean score : 0.229
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