Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNSTLDGNQSSHPFCLLAFGYLETVNFCLLEVLIIVFLTVLIISGNIIVIFVFHCAPLLNHHTTSYFIQTMAYADLFVGVSCVVPSLSLLHHPLPVEESLTCQIFGFVVSVLKSVSMASLACISIDRYIAITKPLTYNTLVTPWRLRLCIFLIWLYSTLV-FLPSFFHWGK------------PGYHGDVFQWCAESWHTDSYFTLFIVMMLYAPAALIVCFTYFNIFRICQQHTKDISERQARFSSQSGETGEVQACPDKRYAMVLFRITSVFYILWLPYIIYFLLESSTGHSNR-------FASFLTTWLAISNSFCNCVIYSLSNSVFQRGLKRLSGAMCTSCASQTTANDPYTVRSKGPLNGCHI |
3ZPQ Chain:A ((16-298)) | --------------------------------LLMALVVLLIVAGNVLVIAAIGSTQRL-QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPG--------CCDFVTNRAYAIASSIISFYIP-LLIMIFVALRVYREAKEQ------------------SRVMLMREHKALKTLGIIMGVFTLCWLP----FFLVNIVNVFNRDLVPDWLFVAF--NWLGYANSAMNPIIYCRSPD-FRKAFKRLLA----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248512 for 1897 contacts (-131.0/contact) +
2D Compatibility (PS) -24882 + (NN) -239 + (LL) 5100
1D Compatibility (HY) -28400 + (ID) 4100
Total energy: -301033.0 ( -158.69 by residue)
QMean score : 0.309
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