Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVM-GLLGNSATIRVTQVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYS-----IIWNPLTTSSYTLSCKLHTFLFEACSYATLLHVLTLSFERYIAICHP---FRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPLVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQIRRIMAAAKPKHDWTRSYFRAYMILLP--FSETFFYLSSVINPLLYTVSSQQFRRVFVQVLCCRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQSKSQSLSLESLEPNSGAKPANSAAENGFQEHEV |
3C9L Chain:A ((27-323)) | --------------------PQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVT-VQHKK--LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT-------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF----GENHAIMGVAFTWVMALACAAPPLVGWSRYIP-------EGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCY-----------GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-----FGPIFMTIPAFFAKT----SAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE-------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177248 for 2292 contacts (-77.3/contact) +
2D Compatibility (PS) -29286 + (NN) -5439 + (LL) 10512
1D Compatibility (HY) -33200 + (ID) 3900
Total energy: -238561.0 ( -104.08 by residue)
QMean score : 0.274
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