Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSPSNATVPCGFLLQGFSEFPHLRPVLFLLLLGVHLATLGGNLLILVAVASMPSRQPML-LFLCQLSAIELCYTLVVVPRSLVDLSTPGHRRGSPISFLSCAFQMQMFVALGGAECFLLAAMAYDRYVAICHPLRYAAVVTPGLCARLALACCLRGLAVSVGLTVAI-------FHLPFCGSRLLLHFFCDITALLHLACTRSYADELPLLGACLVLLLLPSVLILASYGAI-AAALRRLR------CPKGRGKAASTCALHLAVTF-------------LH-YGCATFMYVRPRASYSPRLDRTLALVYTNVTPLLCPLIYSLRNREITAAL-----SRVLGRRRPGQAPGGDLREL |
| 3VG9 Chain:A ((23-309)) | -----------------------------------------GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA-ITIST-----GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVT-GTRAKGIIAICWV-LSFAIGLTPMLGWNNCGQ--SQGCGEGQVACLFEDVVPMNYMVYFNFFA-----------CVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC--PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212991 for 1729 contacts (-123.2/contact) +
2D Compatibility (PS) -25693 + (NN) -11474 + (LL) 3768
1D Compatibility (HY) -25600 + (ID) 3900
Total energy: -275890.0 ( -159.57 by residue)
QMean score : 0.220
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