Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQPESGANGTVIAEFILLGLLEAPGLQPVVFVLFLFAYLVTVRGNLSILAAVLVEPKLHTPMYFFLGNLSVLD--VGCISVTVPSMLSRLLSRKRAVPCGACLTQLFFFHLFVGVDCFLLTAMAYDRFLAICRPLTYSTRMSQTVQRMLVAASWACAFTNALTHTVAMSTLNFCGPNVINHFYCDLPQLFQLSCSSTQLNELLLFAVGFIMA-GTPMALIVISYIHVAAAVLRIRSVEGRKKAFSTCGSHLTVVAIFYGSGIFNYMRLGSTKLSDKDKAVGIFNTVINPMLNPIIYSFRNPDVQSAIWRMLTGRRSLA |
4NC3 Chain:A ((34-240)) | -------------------------------LLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPI-ALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET-VDNPNNIT---CVL--------TKERFGDFMLF--GSLAAFFTPLAIMIVTYFLTIHALQ--KKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137486 for 1288 contacts (-106.7/contact) +
2D Compatibility (PS) -20374 + (NN) -4639 + (LL) 3456
1D Compatibility (HY) -19600 + (ID) 2550
Total energy: -181193.0 ( -140.68 by residue)
QMean score : 0.223
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