Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQINHTNVKEFFFLELTRSRELEFFLFVVFFAVYVATVLGNALIVVTITCESRLHTPMYFLLRNKSVLDIVFSSITVPKFLVDLLSDRKTISYNDCMAQIFFFHFAGGADIFFLSVMAYDRYLAIAKPLHYVTMMRKEVWVALVVASWVSGGLHSIIQVILMLPFPFCGPNTLDAFYCYVLQVVKLAC--TDTFALELFMISNNGLVTLLWFLLLLGSYTVILVMLRSH------SGEGR--NKALSTCTSHMLVVT--------LHFVPCVYIYC-----RPFMTLPMDTTISINNTVITPMLNPIIYSLRNQEMKSAMQRLQRRLGPSESRKWG |
| 2YDO Chain:A ((12-304)) | -----------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP--FAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV---LSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES-----TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234627 for 2035 contacts (-115.3/contact) +
2D Compatibility (PS) -26286 + (NN) -5246 + (LL) 2928
1D Compatibility (HY) -24800 + (ID) 3250
Total energy: -291281.0 ( -143.14 by residue)
QMean score : 0.217
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