Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGDHMVLGSSVTDKKAIILVTILLLLRLVAIAGNGFITAALGVEWVLRRML-LPCDKLLVSLGASRFCLQSVVMGKTIYVFLHPMAFPYNPVLQFLAFQWDFLNAATLWSSTWLSVFYCVKIAT-FTHPVFFWLKHKLSGWLPWMLFSSVGLSSFTTILFFIGNHRMYQNYLRNHLQPWNVTGDSIRS-------YCEKFYLFPLKMITWTMPTAVFFICMILLITSLGRHRKKALLTTSGFREPSVQAHIKALLALLSFAMLFISYFLSLVFS-A-AG--IF-PPLDFKFWVWESVIYLCAAVHPIILLFSNCRLRAVLKSRRSSRCGTP |
| 1U19 Chain:A ((41-327)) | -----------------SMLAAYMFLLIMLGFPINFLTLYVTVQ----HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF---GENHA---IMGVAFTWVMALACAAPPLVGWSR-----Y-IP-E-GM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES-----ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198869 for 2166 contacts (-91.8/contact) +
2D Compatibility (PS) -27280 + (NN) -2621 + (LL) 2808
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -233812.0 ( -107.95 by residue)
QMean score : 0.253
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