Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLESHLIIYFLLAVIQFLLGIFTNGIIVVVNGIDLIKHRKMAPLDLLLSCLAVSRIFLQLFIFYVNVIV----IFFIE-FIMCSANCAILLFINELELWLATWLGVFYCAKVASVRHPLFIWLK--MRISKLVPWMILGSLLYVSMICVFHSKYAGFMVPYFLRKFFSQNATIQKEDTLAIQIFSFVAEFSVPLLIFLFAVLLLIFSLGRHTRQMRNTVA-------------------------------------------------------------------------------------------------------------------------------------G-----------------SRVPGRGAPISALLSILSFLILYFSHCMIKVFL-SSLK---F-HIRRFIFLFFILVIGIYPSGHSLILILGNPKLKQNAKKFLLHSKCCQ |
| 3PBL Chain:A ((41-472)) | --------YALSYCALILAIVFGNGLVCMAVLKER---ALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVV---MPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGF----N--T-TG--DPTVCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PBL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252425 for 2015 contacts (-125.3/contact) +
2D Compatibility (PS) -27226 + (NN) -7945 + (LL) 2644
1D Compatibility (HY) -12000 + (ID) 1650
Total energy: -298602.0 ( -148.19 by residue)
QMean score : 0.320
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