Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFSPADNIFIILITGEFILGILGNGYIALVNWIDWIKKKKISTVDYILTNLVIARICLISVMVVNGIVIVLNPDVYTKNKQQIVIFTFWTFANYLNMWITTCLNVFYFLKIASSSHPLFLWLKWKIDMVVHWILLGCFAISLLVSLIAAIVLSCDYRFHAIAKHKRNITEMFHVS--KIPYFEPLTLFNLFAIVPFIVSLISFFLLVRSLWRHTKQIKLYATG------------------------------------------------------------------------------------------------------------------------------------------------------SRDPSTEVHVRAIKTMTSFIFFFFLYYISSILMTFSYL-M------------TKYKLAVEFGEIAAILYPLGHSLILIVLNNKLRQTFVRMLTCRKIACMI |
3ODU Chain:A ((47-498)) | ----NKIFLPTIYSIIFLTGIVGNGLVILVMG---YQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV---HATNSQ-RPRKLLAEKVVYVGVWIPALLLTIPDFIFA---N--V--SEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260367 for 2053 contacts (-126.8/contact) +
2D Compatibility (PS) -28455 + (NN) 3732 + (LL) 1192
1D Compatibility (HY) -15600 + (ID) 2350
Total energy: -301848.0 ( -147.03 by residue)
QMean score : 0.279
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