Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSGPLWDANPTPRGTLSAPNATTPWLGRDEELAKVEIGVLATVLVLATGGNLAVLLTLGQLGRKRSRMHLFVLHLALTDLAVALFQVLPQLLWDITYRFQGP----DLLCRAVKYLQVLSMFASTYMLLAMTLDRYLAVCHPLR--SLQQPGQSTYLLIAAPWLLAAIFSLPQVFIFSLREVIQGSGVLDCWADFG---FPWGPRAYLTWTTLAIFVLPVTMLTACYSLICHEICKNLKVKTQAWRVGGGGWRTWDRPSPSTLAATTRGLPSRVSSINTISRAKIRTVKMTFVIVLAYIACWAPFFSVQMWSVWDKNAPDEDSTNVAFTISMLLGNLNSCCNPWIYMGFNSHLLPRPLRHLACCGGPQPRMRRRLSDGSLSSRHTTLLTRSSCPATLSLSLSLTLSGRPRPEESPRDLELADGEGTAETIIF |
| 2Y01 Chain:A ((17-285)) | ---------------------------------------LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLL-VVP---FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAK-VIICTVWAISALVSFLPIMMHWWRD--EDPQALKCYQDPGCCDFV-TNRAYAIASSIISFYIPLLIM--------------IFVALRVYREAKEQ---------------SRVMLMR----------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV-PDWLFVAFN---WLGYANSAMNPIIYCRSPDFRKAFKRLLA----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187294 for 1802 contacts (-103.9/contact) +
2D Compatibility (PS) -26025 + (NN) -12479 + (LL) 7852
1D Compatibility (HY) -26400 + (ID) 3850
Total energy: -248196.0 ( -137.73 by residue)
QMean score : 0.255
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