Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------------------LEMSCIQNLLPCKPYLPGTEPPPPVCCLPLKDMVAHQAQCLCSALANPDLL--------KDFNVTMDGALKLAKTCGASVDMSVCKNGNH-----
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM-ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR-APQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18296 for 413 contacts (-44.3/contact) +
2D Compatibility (PS) -8137 + (NN) 574 + (LL) 384
1D Compatibility (HY) -800 + (ID) 600
Total energy: -26875.0 ( -65.07 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: