Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCNQQTRVLISTILCRIAIWYDHMLFIDLVNIISREFCSAKDVYYNILQLFGIAGLGAMVRPLGASVFGHIGDRYGRKMALTIAILLISIPSSLVAFIPGYSRVGITSTILLFAIHVTQGIALGAEQGGSSVYLIEHLSNKKKLGMFFGIISFGRSIGVLLFVMIVIICKKITDFNAWGWRMPFTFSAIWGLMSA-YSIYTLGETPAYEK----NREQR-NLPNLPII-----ELVKRYKRALILAVLISVPVNVAV-GFTIFLRTIAKEIVQVEMYVTTYVNEIVLIITSILIPISSIALGMLADRVGKERIAILFIIITIIL--CCPMLSIAYYYKSYLIIMLS-VMALSI-IERGINPIGIVASELFPPNVRFSGVSLSRNISFALHG-GFTPMICTWLTITFPQINFVAGLYIIFCLLISLIAILQIKSQDKNFDW |
| 1PW4 Chain:A ((25-411)) | --RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSR-GDLGFAL-----SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW-SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA----WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-----TAKQIFMQYVLP-NKLLWYIAI-ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL----CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-PAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY-LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -336550 for 2982 contacts (-112.9/contact) +
2D Compatibility (PS) -35569 + (NN) 1630 + (LL) 2384
1D Compatibility (HY) -16400 + (ID) 2200
Total energy: -386705.0 ( -129.68 by residue)
QMean score : 0.253
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