Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEQKDKYRPCVGIMLFNKQGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAKNKDWIYYNLPEEV---IPTCWNGRYSGQKQRWFLMKFYGEGKDINI--NYTDHPEFKEWRWQSVDNLVAGAIPFKKEVYKTVIEEFSSQIKVSIIK
1F3Y Chain:A ((6-165))
MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL------
General information:
TITO was launched using:
RESULT:
Template:
1F3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70854 for 1184 contacts (-59.8/contact) +
2D Compatibility (PS) -16659 + (NN) -7124 + (LL) 700
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -110337.0 ( -93.19 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1F3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3Y-query.scw
PDB file :
Tito_Scwrl_1F3Y.pdb
: