Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHKIKKRKLSRCTEHRLSMLKNLSISLINHEQIITTLPKAKELRPYVEKFITIAKNKNTLHGRRLLLSRLHNNKLVVDKLLNVLASRYQGCKGGYSRVMKFSTRKGDCASMAVIELVNRDVTAKGKVCDKNKEKNEVATKS
5AKA Chain:N ((1-124))
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKT-DSVANRRLAFARTRDNEIVA-KLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAAAE-------------
General information:
TITO was launched using:
RESULT:
Template:
5AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41631 for 817 contacts (-51.0/contact) +
2D Compatibility (PS) -12901 + (NN) 2246 + (LL) 800
1D Compatibility (HY) -8400 + (ID) 2900
Total energy: -62786.0 ( -76.85 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_5AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AKA-query.scw
PDB file :
Tito_Scwrl_5AKA.pdb
: