Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMAHIKEASDTNFSEMYGSLFPSKENGKGTWIDWKAAFKQQKLLEAESNVMLL-EISYSLLKENQLYKEEVGTKLDNIIKNNQGNVRKGRQIC
1OQD Chain:A ((15-63))
---------------------PTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLV
General information:
TITO was launched using:
RESULT:
Template:
1OQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3262 for 174 contacts (18.7/contact) +
2D Compatibility (PS) -4841 + (NN) 777 + (LL) 1604
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -3898.0 ( -22.40 by residue)
QMean score : -0.039
(partial model without unconserved sides chains):
PDB file :
Tito_1OQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OQD-query.scw
PDB file :
Tito_Scwrl_1OQD.pdb
: