Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRIRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK
3VZZ Chain:A ((1-222))
MYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYAR-VSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTV-------
General information:
TITO was launched using:
RESULT:
Template:
3VZZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171288 for 1866 contacts (-91.8/contact) +
2D Compatibility (PS) -23739 + (NN) -8523 + (LL) 652
1D Compatibility (HY) -26400 + (ID) 5250
Total energy: -234548.0 ( -125.70 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_3VZZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZZ-query.scw
PDB file :
Tito_Scwrl_3VZZ.pdb
: