Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKLAVFDFDSTLVNAETIESLARAWGVFDEVREITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGAFELISALKEKNYKVVCFSGGFDLATNHYRDLLNLDAAFSNTLIVENNALNGLVTGHMMFSYSKGEMLLALQRLLNISKDRTLVVGDGANDLSMFKHAHIKIAFNAKEILKQHATHCIDKPNLALIKPLI
3N28 Chain:A ((109-300))
---LIVLDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLKDAPEQILSQVRETLPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAYHAKPKVEAKAQTAVRFAGLGGVVCIL
General information:
TITO was launched using:
RESULT:
Template:
3N28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123191 for 1563 contacts (-78.8/contact) +
2D Compatibility (PS) -21467 + (NN) -14456 + (LL) 392
1D Compatibility (HY) -13200 + (ID) 3800
Total energy: -175722.0 ( -112.43 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3N28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N28-query.scw
PDB file :
Tito_Scwrl_3N28.pdb
: