Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNIKKRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTMPFIAAIHEISAYCGHPSNFLVEGLVMLGLVCVFGICSRLCAKLGW |
| 1YTR Chain:A ((18-26)) | --------------------------------------------------------------------------------------------------------------------------------------------------------KKLFKKWGW |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YTR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1173 for 24 contacts (-48.9/contact) +
2D Compatibility (PS) -867 + (NN) 422 + (LL) 12244
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 8826.0 ( 367.75 by residue)
QMean score : 0.526
|
|
|