Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEGVFFAIGAHPYDVESFDEGLFEKFVSH-----QKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNL-LKSY--PKAFGVLHCFNADSMLLELSDRFYY-----GIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
1ZZM Chain:A ((5-259))
-FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQW------LLDEQLKLAKRYDLPVILHSRR-THDKLAMHLKRHDLPRT-GVVHGFSGS---LQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP
General information:
TITO was launched using:
RESULT:
Template:
1ZZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132317 for 2064 contacts (-64.1/contact) +
2D Compatibility (PS) -25682 + (NN) -13017 + (LL) 1228
1D Compatibility (HY) -13200 + (ID) 3750
Total energy: -186738.0 ( -90.47 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1ZZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZZM-query.scw
PDB file :
Tito_Scwrl_1ZZM.pdb
: