Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKMGFIGNGKSTNRYHLPFILERDNIEVKTIYNRNPKTATWD--KIEGVHYTTDLDELLKDPEIQLITISTTQSSHFDYAKMVLENGKNVLVEKPFMMTYAEAKEIFELAKERGLLVQCYQNRRFDSDFLTAQKVIESGKLGELLEVEMHYDYFRPEIPESVHEFKFYDS-YLYGHGCHTIDQVLSYFGKPDNIHYDVRQLLGEGRMNDYFDLDLYYGVTKVSVKSSYFRIKARPSFVLYGKKGTFTKETKDRQEEHLKLFYMPSNPDFGIDLPEHYGTLTYVDDAGVWHEEKVISEVGDYGRVYDDLYEAIINGKPKQVTDEETLLQMEILEKGVEACK |
3GDO Chain:A ((14-349)) | -IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVH---ELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEV----------ATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIVPANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDK-KTETIPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMESSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150639 for 2686 contacts (-56.1/contact) +
2D Compatibility (PS) -35424 + (NN) -16752 + (LL) 1256
1D Compatibility (HY) -15200 + (ID) 5150
Total energy: -221909.0 ( -82.62 by residue)
QMean score : 0.481
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