Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPIEEIGEEIGAKVEKVARKTGNVAGTAAKLSVYSSIWAVKTGVNKTRAFAQGFKQGWSGK
1TRE Chain:A ((142-187))
---------EEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQA--------
General information:
TITO was launched using:
RESULT:
Template:
1TRE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5505 for 194 contacts (28.4/contact) +
2D Compatibility (PS) -4764 + (NN) 792 + (LL) 884
1D Compatibility (HY) 0 + (ID) 750
Total energy: 1667.0 ( 8.59 by residue)
QMean score : 0.182
(partial model without unconserved sides chains):
PDB file :
Tito_1TRE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TRE-query.scw
PDB file :
Tito_Scwrl_1TRE.pdb
: