Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLLAILSMVLLLSLAACGGSSDSSKDKNGKEEIVMWGSWSGDQ-IKQLEKQIDSYNKSQDKYKVKY--VMQENVEEKLLTGIAGGELPDIIMWDRYQTALYAPKGV-LEPLDKLVKEDNLKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGV---KPPTTWDELATAAQKTTKWDGNKMTQAGMSLQ----DVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQND----LKVYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGV-VEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANK--IAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK |
| 4QSE Chain:A ((31-401)) | -----------------------------------------WSLDRDIQPAPNLIKEFNALNNGIKIEYRQLQFDDVVSESMRAYSTGNAPDIIAIDNPNHAMFASRGAFLDVTDMIAKSDVIKTENYFPGPLKSVTWDGKYFGVPKATNTIALYYNKDLFKAAGLDAAKPPQTWDELVDAARKLTNPAKNVY---GISFSAKANEEGTFQ-FLPWAQMAGATYKN----INTDGAVKALETWKTLLDEKLASPDTLTRSQWDSTATFNAGNAAMAISGPWEIDRMLKDAKFDWGVTLLPVPTPDAPRSSAMGDYNWAIFSKTKHPAEAFKAIEFFASKDK---DMFKNFGQLPARSDIPVPPTGNALKDEALKTFVEQLKYAQPRGPSPEWPKISK-AIQDAIQGALSGQMTPKAALDQAAEK----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QSE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45536 for 3067 contacts (-14.8/contact) +
2D Compatibility (PS) -37530 + (NN) -13907 + (LL) 4476
1D Compatibility (HY) -16800 + (ID) 4950
Total energy: -114247.0 ( -37.25 by residue)
QMean score : 0.451
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