Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQE-NEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNF-GALLQEPNYDRKIFQD
4KDZ Chain:A ((4-156))
----IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGD---YLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLR-----------
General information:
TITO was launched using:
RESULT:
Template:
4KDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80746 for 1095 contacts (-73.7/contact) +
2D Compatibility (PS) -16242 + (NN) -5949 + (LL) 556
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -118131.0 ( -107.88 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4KDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KDZ-query.scw
PDB file :
Tito_Scwrl_4KDZ.pdb
: