Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LMKHLTLWHTNDVHSHLEHWPRIFN--FLKEKRTAAD-------KENQSALFFDIGDFLDRVHPLTEGTNGLANTDLLNQLPYDVVTFGNNEG----TTLAHEDLDKLYEHAVFPVVCCNFYTNKECTEQPDWVKSIVYKEIEQVKIAIIGATA-----PFRDYYEEMGWGIEEPISSIKKQVAGLD--EDTDVVILLSHLG----------LPSDERIALEIP--EVDVILGGHTHHLL--------ETGKIEGNAL---------LAAAGRWGEYIGKVDIELDE------NNQILT---KTAMTFKTEDLPAAPNEANEIQ------GFFDKGRAELSEKVVAIPGKLAHNW----FDDSEIAHILNEAVCEWTGAETFVMNAGIFMTDFEAGIVTDFDIHQMLPHPLNAIALTMSGEELEILIDGIYRKKAELQDIPLRGFGFRGEYFGTVLMERAGFDAENQVALFDNKPIDKTREYRIATHDTFVFAPFFPIVKQIKRKEVYTPELLRDILKWKLKKMYGQEEDK |
| 2USH Chain:A ((34-495)) | ----ITVLHTNDHHGHF--WRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGV-PESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQE-----KWAKFPLLSANIY--QKSTGERLFKPWALFKR-QDLKIAVIGLTTDDTAK----YFTDIEF--RKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKV---SERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPD-----------SGAYPQFANVSFVAK-------KIKGEPVDPAKTYRMAT--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2USH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174107 for 2957 contacts (-58.9/contact) +
2D Compatibility (PS) -39656 + (NN) -8049 + (LL) 6424
1D Compatibility (HY) -16800 + (ID) 5150
Total energy: -237338.0 ( -80.26 by residue)
QMean score : 0.355
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