Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKSKLELLFTKISHVMNVWQATFFAAVSWVLALITIQTIYLWSISIRDDSLFLREVSQAIVQLFGTNKYTRIMQSFWMMSLKFLIIFLIACLFFAFFYRLMRQRILKKQLRTINFALNDGKPVDTESFVPEIQELERNIENMRERQKKLMQQEEQAQQARNDLITNVSHDLRTPLTSILGYLSYIHEDRYR-DEIELRYYTELVYGKARHLHKLIDDLFSYTRLDSVDYQLKKDELDIVELLRQLVAEYDGRAAERNMQIVEHFDAN-KLIIGG--DGNQIMRLFENLFSNALRYGE---GNKQIDVSAKKEDNMAVVRVTNYGEEIPNVDLPYLFERFYKVDKNRT--TTGTGLGLAIAKSIVEKHGGIVTAESK-KRQTSFIVKLPLI |
| 4JAV Chain:A ((3-246)) | --------------------------------------------------------------------------------------------------------------------------------------------NVTE--SKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVL--FESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIP-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87112 for 1620 contacts (-53.8/contact) +
2D Compatibility (PS) -25454 + (NN) -7638 + (LL) 15536
1D Compatibility (HY) -19200 + (ID) 3650
Total energy: -127518.0 ( -78.71 by residue)
QMean score : 0.542
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