Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLLLKCKDKKVKAFTLLEMLVVLIIISVLLLLFVPNLSKQKESVTRTGNAAVVKVVESQAELFELQETGRKASLSTLKSGGYITEKQEKAYLDYYKDSSNGSQKISS
1OQW Chain:A ((1-55))
---------------FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADG
General information:
TITO was launched using:
RESULT:
Template:
1OQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6921 for 216 contacts (-32.0/contact) +
2D Compatibility (PS) -5911 + (NN) -4353 + (LL) 1356
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -19229.0 ( -89.02 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_1OQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OQW-query.scw
PDB file :
Tito_Scwrl_1OQW.pdb
: