Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKECRDFYRQIQHTYNDIAVREDAVLSSILLSASNGLIKTSDVPRVAYELTQQLENNEIEKSFESLATVKELKKSAKKLSERYEQNKVTTGLLSKVFGNH
2KMF Chain:A ((33-62))
---------------------------------------------------------------PNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQT
General information:
TITO was launched using:
RESULT:
Template:
2KMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9930 for 119 contacts (83.4/contact) +
2D Compatibility (PS) -3229 + (NN) -1892 + (LL) 4948
1D Compatibility (HY) 800 + (ID) 200
Total energy: 10357.0 ( 87.03 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_2KMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KMF-query.scw
PDB file :
Tito_Scwrl_2KMF.pdb
: