Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASIIYSPKDIFEQ-DFKVSMRGYDKKEVDVF--LDDVIKDYENYLEQIEKLQMENRRLQQALDKKESEASNVRNSGTAMYNQKPIAQSATNFDILKRISRLEKEVFGRQIRE
2DUT Chain:A ((233-290))
-------PVLIMEKMNFKMIELPYVKRELSMFILLPDD-----TGLEQLER-ELTYERLSEWADSKMMTETLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTTNADFRGMTDL
General information:
TITO was launched using:
RESULT:
Template:
2DUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5384 for 233 contacts (23.1/contact) +
2D Compatibility (PS) -5538 + (NN) -2561 + (LL) 1360
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -5905.0 ( -25.34 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_2DUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DUT-query.scw
PDB file :
Tito_Scwrl_2DUT.pdb
: