Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE
1RNL Chain:A ((8-214))
-----ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASL-------QLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF-----
General information:
TITO was launched using:
RESULT:
Template:
1RNL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96870 for 1547 contacts (-62.6/contact) +
2D Compatibility (PS) -21019 + (NN) -10102 + (LL) 932
1D Compatibility (HY) -17200 + (ID) 3650
Total energy: -147909.0 ( -95.61 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1RNL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RNL-query.scw
PDB file :
Tito_Scwrl_1RNL.pdb
: