Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIGLFCAAGFSTGMLVNNMKIAADKEGIEAHIEAYSQGKIADYAKDLDVALLGPQVSYTLDKSKSICDEYGVPIAVIPMADYGMLDGVKVLKLALSLLETRKEA
1H9C Chain:A ((6-93))
---IYLF-SAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNK--PVEVIDSLLYGKVDGLGVLKAAVAAIKKAAAN
General information:
TITO was launched using:
RESULT:
Template:
1H9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71590 for 614 contacts (-116.6/contact) +
2D Compatibility (PS) -9120 + (NN) -710 + (LL) 552
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -90518.0 ( -147.42 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1H9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H9C-query.scw
PDB file :
Tito_Scwrl_1H9C.pdb
: