Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYDQINSYLVDIFNRIMIIEEMSLKT----SQFSDVSLKEMHTIEIIGKHSE--VTPSDVARELMLTLGTVTTSLNKLEKKGYIERKRSSIDRRVVHLSLTKRG-RLLDRLHSKF---HKSMVSHIIEDLGEEDIKMLTSALGNLHKFLEDLV
4LD5 Chain:A ((11-139))
-----------------MISHEMKPKADQKLEQF-DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ-------
General information:
TITO was launched using:
RESULT:
Template:
4LD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36374 for 696 contacts (-52.3/contact) +
2D Compatibility (PS) -12177 + (NN) -2640 + (LL) 2228
1D Compatibility (HY) -5600 + (ID) 2000
Total energy: -56563.0 ( -81.27 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_4LD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LD5-query.scw
PDB file :
Tito_Scwrl_4LD5.pdb
: