Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKNKFLLVSIVFIIIFVVQPQNFQSLKNI--FTQNDIASQLNISSSPEEKNDGLGTAYQTQNEDLKSKSFDGQHQVIVVNEKAQFTAEELSMRNGSWEKYDNLDFLNRVGVAEAMLGKELMPKEARQDISSVKPTGWKNKKITFNGKQDYLYNRSHLIGFQLSGENANVKNLFTGTRALNANFNDDKSSMVYYENEVANYIKKTNHHVRYRVTPLFKNVELVARGVRIEAQSIEDETISFDVYIFNGQPGYDIDYLTGSSEKIMITK |
4C3H Chain:B ((766-811)) | --------------------PNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGAT |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4C3H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 8382 for 140 contacts (59.9/contact) +
2D Compatibility (PS) -4460 + (NN) 1252 + (LL) 2744
1D Compatibility (HY) -4000 + (ID) 700
Total energy: 3218.0 ( 22.99 by residue)
QMean score : 0.285
|
|
|