Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVVFLKILVPLVSLVFLISLGITILAGVLGAVGGSQSNCTIEVVTSTSTDSSISSGDGSIDSFVKEHKEAYILSWKAGGFLPSASITQTMIENGFNFTNPNGTSLWQAHNMGGVKTSSKSNFPVTLATYGQDSVDLSGTKPGARVGDGTGGAYTWFSSYDAGIVGKAEFMAHQTLYTKAINNIDGIATLSAIAD---GGWATDGTYKTKLID-MYHKLGKTYEWLDKEAISAHGDKPYKATTASAGDAGLSDIFTSNSKDCSDSSSGGATDGTGTVPADAIAWGYRPDNLPESLKQYIIDPKSLGMAYANSSGWFNPGSDYLAGQCVNLTISLGNHLWGHSGSVSGNGKDQAGAWANIFGNSVKTTPKRGAIFSTQNGGGGYGHTGIVCHVFENGSILIVEQNTPLSGADYFKKSYTWNYRIWTPAQQKAEVISFAYPYGKEPKLGN |
| 4L2B Chain:A ((36-129)) | ---------------------------------------------------------------------------------------------------------------------------------------VKLNGLIPGTKFENKS--LEEIVSSSDGGVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFANANFA----------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L2B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15730 for 437 contacts (-36.0/contact) +
2D Compatibility (PS) -9224 + (NN) -150 + (LL) 9600
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -21604.0 ( -49.44 by residue)
QMean score : 0.086
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