Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTYRVKSDKDFQMIFSRGKNVANRKFVIYYLEKEQKHFRVGISVSKK-LGNAVVRNAIKRKIRHVLLSQKTALQDYDFVVIARKGVEELNYQALEKNLIHVLKIAGLI
2LJP Chain:A ((7-105))
-PRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHCRL
General information:
TITO was launched using:
RESULT:
Template:
2LJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38019 for 602 contacts (-63.2/contact) +
2D Compatibility (PS) -10782 + (NN) -6140 + (LL) 208
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: -61833.0 ( -102.71 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_2LJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LJP-query.scw
PDB file :
Tito_Scwrl_2LJP.pdb
: