Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKELRSKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKG------VEVVHAFVNKVMIPHVEKGTYERV-KDYKTSLQELLQSHGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATLQ
2NUF Chain:A ((6-218))
------QLEKKLGYTFKDKSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEG---RVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI-KEYRTLGEGKSKKEAEQRAAEELIKLLE
General information:
TITO was launched using:
RESULT:
Template:
2NUF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78658 for 1490 contacts (-52.8/contact) +
2D Compatibility (PS) -22215 + (NN) -10222 + (LL) 1312
1D Compatibility (HY) -18800 + (ID) 3800
Total energy: -132383.0 ( -88.85 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2NUF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NUF-query.scw
PDB file :
Tito_Scwrl_2NUF.pdb
: