Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQGDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
1WDV Chain:A ((36-152))
-------------------------------------GVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-KPVRLARANEVVELTGYPVGGVPPVAL--PPNIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATGAVVADVSE
General information:
TITO was launched using:
RESULT:
Template:
1WDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13054 for 871 contacts (-15.0/contact) +
2D Compatibility (PS) -11669 + (NN) 2003 + (LL) 2596
1D Compatibility (HY) 1200 + (ID) 600
Total energy: -19524.0 ( -22.42 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_1WDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WDV-query.scw
PDB file :
Tito_Scwrl_1WDV.pdb
: