Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERVCLKESSYYLLYKPSGVVSAVRD-SEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDG-TKCKPAELTIDTA------------NNDKSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
2OML Chain:A ((15-189))
---------------------------------------------------------------LFNKPYDVLPQFTDEAGRKTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRRKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD-----------
General information:
TITO was launched using:
RESULT:
Template:
2OML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88704 for 1159 contacts (-76.5/contact) +
2D Compatibility (PS) -16960 + (NN) -2295 + (LL) 5816
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -116193.0 ( -100.25 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_2OML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OML-query.scw
PDB file :
Tito_Scwrl_2OML.pdb
: